IL_6MTC_209

3D structure

PDB id

6MTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

6MTC|1|9|A|628

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTC_209 not in the Motif Atlas

Homologous match to IL_8C3A_425

Geometric discrepancy: 0.3165

The information below is about IL_8C3A_425

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.2

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6MTC|1|9|G|611
6MTC|1|9|PSU|612
6MTC|1|9|G|613
6MTC|1|9|C|614
6MTC|1|9|C|615
6MTC|1|9|A|616
6MTC|1|9|G|617
*
6MTC|1|9|C|624
6MTC|1|9|G|625
6MTC|1|9|G|626
6MTC|1|9|U|627
6MTC|1|9|A|628
6MTC|1|9|A|629
6MTC|1|9|U|630
6MTC|1|9|U|631
6MTC|1|9|C|632

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

40S ribosomal protein S3

Chain XX

40S ribosomal protein S23

Chain ee

40S ribosomal protein S30