IL_6MTC_294
3D structure
- PDB id
- 6MTC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with Z-site tRNA and IFRD2 (unrotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UGUA(PSU)(OMG)*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 6MTC|1|5|U|4634, 6MTC|1|5|PSU|4636
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTC_294 not in the Motif Atlas
- Homologous match to IL_8P9A_346
- Geometric discrepancy: 0.4478
- The information below is about IL_8P9A_346
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_98200.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
6MTC|1|5|U|4632
6MTC|1|5|G|4633
6MTC|1|5|U|4634
6MTC|1|5|A|4635
6MTC|1|5|PSU|4636
6MTC|1|5|OMG|4637
*
6MTC|1|5|C|4662
6MTC|1|5|G|4663
6MTC|1|5|A|4664
6MTC|1|5|A|4665
6MTC|1|5|G|4666
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain W
- 60S ribosomal protein L24
- Chain d
- 60S ribosomal protein L31
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