IL_6MTD_007

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

6MTD|1|5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_007 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2138

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.1

Basepair signature

cWW-cWW

Number of instances in this motif group

27

Unit IDs

6MTD|1|5|C|118
6MTD|1|5|G|119
6MTD|1|5|A|120
6MTD|1|5|A|121
*
6MTD|1|5|U|152
6MTD|1|5|G|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain G

eL8

Chain N

eL15

Chain h

uL29