IL_6MTD_081

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

6MTD|1|5|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_081 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.1609

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6MTD|1|5|U|1957
6MTD|1|5|A|1958
6MTD|1|5|U|1959
6MTD|1|5|A|1960
6MTD|1|5|G|1961
6MTD|1|5|A|1962
6MTD|1|5|C|1963
6MTD|1|5|A|1964
6MTD|1|5|G|1965
*
6MTD|1|5|C|2022
6MTD|1|5|C|2023
6MTD|1|5|G|2024
6MTD|1|5|A|2025
6MTD|1|5|A|2026

Current chains

Chain 5

28S rRNA

Nearby chains

Chain m

eL40

Chain s

uL10