IL_6MTD_101
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 6MTD|1|5|U|2661, 6MTD|1|5|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_101 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1583
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6MTD|1|5|U|2656
6MTD|1|5|G|2657
6MTD|1|5|G|2658
6MTD|1|5|A|2659
6MTD|1|5|A|2660
6MTD|1|5|U|2661
6MTD|1|5|G|2662
*
6MTD|1|5|C|2672
6MTD|1|5|G|2673
6MTD|1|5|A|2674
6MTD|1|5|G|2675
6MTD|1|5|A|2676
6MTD|1|5|G|2677
6MTD|1|5|A|2678
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain NN
- uS15
- Chain R
- eL19
- Chain Z
- eL27
- Chain c
- eL30
- Chain g
- eL34
- Chain p
- eL43
Coloring options: