IL_6MTD_148
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- C(UR3)CAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: UR3
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_148 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1177
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6MTD|1|5|C|4596
6MTD|1|5|UR3|4597
6MTD|1|5|C|4598
6MTD|1|5|A|4599
6MTD|1|5|G|4600
6MTD|1|5|U|4601
6MTD|1|5|A|4602
6MTD|1|5|C|4603
*
6MTD|1|5|G|4608
6MTD|1|5|G|4609
6MTD|1|5|A|4610
6MTD|1|5|A|4611
6MTD|1|5|C|4612
6MTD|1|5|C|4613
6MTD|1|5|G|4614
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain V
- uL14
- Chain m
- eL40
- Chain v
- eEF2
Coloring options: