IL_6MTD_185

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

6MTD|1|9|G|113, 6MTD|1|9|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_185 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1602

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6MTD|1|9|U|112
6MTD|1|9|G|113
6MTD|1|9|G|114
6MTD|1|9|U|115
*
6MTD|1|9|A|348
6MTD|1|9|A|349

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8

Chain LL

uS17