IL_6MTD_226

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_226 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.1717

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6MTD|1|9|G|942
6MTD|1|9|U|943
6MTD|1|9|A|944
6MTD|1|9|U|945
*
6MTD|1|9|A|981
6MTD|1|9|G|982
6MTD|1|9|A|983
6MTD|1|9|C|984

Current chains

Chain 9

18S rRNA

Nearby chains

Chain A

uL2

Chain BB

eS1

Chain OO

uS11