IL_6MTD_250

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAUGC*GAGG

Length

9 nucleotides

Bulged bases

6MTD|1|9|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_250 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.3574

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

6MTD|1|9|C|1395
6MTD|1|9|A|1396
6MTD|1|9|U|1397
6MTD|1|9|G|1398
6MTD|1|9|C|1399
*
6MTD|1|9|G|1447
6MTD|1|9|A|1448
6MTD|1|9|G|1449
6MTD|1|9|G|1450

Current chains

Chain 9

18S rRNA

Nearby chains

Chain DD

uS3

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain gg

RACK1