IL_6MTD_282

3D structure

PDB id

6MTD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTD_282 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.0887

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6MTD|1|5|G|2358
6MTD|1|5|U|2359
6MTD|1|5|A|2360
6MTD|1|5|G|2361
6MTD|1|5|U|2362
6MTD|1|5|A2M|2363
6MTD|1|5|OMG|2364
*
6MTD|1|5|C|3858
6MTD|1|5|G|3859
6MTD|1|5|A|3860
6MTD|1|5|A|3861
6MTD|1|5|A|3862
6MTD|1|5|C|3863

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

uL4

Chain P

uL22