IL_6MTD_298
3D structure
- PDB id
- 6MTD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome with eEF2 and SERBP1 (unrotated state with 40S head swivel)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCAUGG*UCUGUGAUG
- Length
- 16 nucleotides
- Bulged bases
- 6MTD|1|9|C|1331, 6MTD|1|9|U|1494, 6MTD|1|9|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MTD_298 not in the Motif Atlas
- Homologous match to IL_8P9A_439
- Geometric discrepancy: 0.1023
- The information below is about IL_8P9A_439
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_86012.1
- Basepair signature
- cWW-tHS-tWH-cWH-cWW-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
6MTD|1|9|U|1329
6MTD|1|9|G|1330
6MTD|1|9|C|1331
6MTD|1|9|A|1332
6MTD|1|9|U|1333
6MTD|1|9|G|1334
6MTD|1|9|G|1335
*
6MTD|1|9|U|1492
6MTD|1|9|C|1493
6MTD|1|9|U|1494
6MTD|1|9|G|1495
6MTD|1|9|U|1496
6MTD|1|9|G|1497
6MTD|1|9|A|1498
6MTD|1|9|U|1499
6MTD|1|9|G|1500
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain DD
- uS3
- Chain KK
- eS10
- Chain UU
- uS10
- Chain dd
- uS14
- Chain v
- eEF2
- Chain w
- SERBP1
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