IL_6MTE_189

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

6MTE|1|9|U|305, 6MTE|1|9|G|307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_189 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3675

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6MTE|1|9|C|216
6MTE|1|9|A|217
6MTE|1|9|U|218
6MTE|1|9|U|219
*
6MTE|1|9|A|302
6MTE|1|9|C|303
6MTE|1|9|C|304
6MTE|1|9|U|305
6MTE|1|9|C|306
6MTE|1|9|G|307
6MTE|1|9|G|308
6MTE|1|9|G|309

Current chains

Chain 9

18S rRNA

Nearby chains

Chain EE

eS4

Chain II

eS8