IL_6MTE_193

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUCAA*UGACCACG

Length

14 nucleotides

Bulged bases

6MTE|1|9|U|361, 6MTE|1|9|C|399

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_193 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.1385

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

6MTE|1|9|U|359
6MTE|1|9|A|360
6MTE|1|9|U|361
6MTE|1|9|C|362
6MTE|1|9|A|363
6MTE|1|9|A|364
*
6MTE|1|9|U|396
6MTE|1|9|G|397
6MTE|1|9|A|398
6MTE|1|9|C|399
6MTE|1|9|C|400
6MTE|1|9|A|401
6MTE|1|9|C|402
6MTE|1|9|G|403

Current chains

Chain 9

18S rRNA

Nearby chains

Chain II

eS8

Chain LL

uS17

Chain XX

uS12