IL_6MTE_210

3D structure

PDB id

6MTE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome with eEF2 and SERBP1 (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MTE_210 not in the Motif Atlas

Homologous match to IL_4V88_418

Geometric discrepancy: 0.1182

The information below is about IL_4V88_418

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6MTE|1|9|C|676
6MTE|1|9|G|677
6MTE|1|9|U|678
6MTE|1|9|A|679
6MTE|1|9|G|680
*
6MTE|1|9|U|1025
6MTE|1|9|C|1026
6MTE|1|9|A|1027
6MTE|1|9|A|1028
6MTE|1|9|G|1029

Current chains

Chain 9

18S rRNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain LL

uS17

Chain NN

uS15

Chain WW

uS8

Chain XX

uS12