IL_6MWN_001
3D structure
- PDB id
- 6MWN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of hepatitis A virus IRES domain V in complex with Fab HAVx
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.84 Å
Loop
- Sequence
- UUUG*CUUAUG
- Length
- 10 nucleotides
- Bulged bases
- 6MWN|1|A|U|672, 6MWN|1|A|A|673, 6MWN|1|A|U|674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6MWN_001 not in the Motif Atlas
- Homologous match to IL_6MWN_004
- Geometric discrepancy: 0.0737
- The information below is about IL_6MWN_004
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_70096.1
- Basepair signature
- cWW-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6MWN|1|A|U|604
6MWN|1|A|U|605
6MWN|1|A|U|606
6MWN|1|A|G|607
*
6MWN|1|A|C|670
6MWN|1|A|U|671
6MWN|1|A|U|672
6MWN|1|A|A|673
6MWN|1|A|U|674
6MWN|1|A|G|675
Current chains
- Chain A
- HAV dV RNA (92-MER)
Nearby chains
- Chain H
- Fab HAVx Heavy Chain
- Chain L
- Fab HAVx Light Chain
Coloring options: