IL_6MXQ_010

3D structure

PDB id

6MXQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GUCCG*CUCUC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MXQ_010 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.2895

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

18

Unit IDs

6MXQ|3|A|G|102
6MXQ|3|A|U|103
6MXQ|3|A|C|104
6MXQ|3|A|C|105
6MXQ|3|A|G|106
*
6MXQ|3|A|C|136
6MXQ|3|A|U|137
6MXQ|3|A|C|138
6MXQ|3|A|U|139
6MXQ|3|A|C|140

Current chains

Chain A

RNA C-JUN TL

Nearby chains