IL_6MXQ_035

3D structure

PDB id

6MXQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACU*ACCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MXQ_035 not in the Motif Atlas

Geometric match to IL_5M0H_002

Geometric discrepancy: 0.2673

The information below is about IL_5M0H_002

Detailed Annotation

Multiple bulged bases, near cWW

Broad Annotation

Multiple bulged bases, near cWW

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

6MXQ|9|A|A|108
6MXQ|9|A|C|109
6MXQ|9|A|U|110
*
6MXQ|9|A|A|131
6MXQ|9|A|C|132
6MXQ|9|A|C|133
6MXQ|9|A|U|134

Current chains

Chain A

RNA C-JUN TL

Nearby chains