IL_6MXQ_039

3D structure

PDB id

6MXQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of a c-JUN 5' UTR stem-loop associated with specialized cap-dependent translation initiation

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

ACU*ACCU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6MXQ_039 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.2733

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6MXQ|10|A|A|108
6MXQ|10|A|C|109
6MXQ|10|A|U|110
*
6MXQ|10|A|A|131
6MXQ|10|A|C|132
6MXQ|10|A|C|133
6MXQ|10|A|U|134

Current chains

Chain A

RNA C-JUN TL

Nearby chains