IL_6N1D_003
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CCUAAG*UAG
- Length
- 9 nucleotides
- Bulged bases
- 6N1D|1|A16S|C|48, 6N1D|1|A16S|A|51
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_003 not in the Motif Atlas
- Geometric match to IL_4LFB_003
- Geometric discrepancy: 0.1721
- The information below is about IL_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_14177.2
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N1D|1|A16S|C|47
6N1D|1|A16S|C|48
6N1D|1|A16S|U|49
6N1D|1|A16S|A|50
6N1D|1|A16S|A|51
6N1D|1|A16S|G|52
*
6N1D|1|A16S|U|359
6N1D|1|A16S|A|360
6N1D|1|A16S|G|361
Current chains
- Chain A16S
- 16S rRNA
Nearby chains
- Chain AS12
- 30S ribosomal protein S12
- Chain BL09
- 50S ribosomal protein L9
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