IL_6N1D_004
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CAU*AG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_004 not in the Motif Atlas
- Homologous match to IL_4LFB_004
- Geometric discrepancy: 0.1324
- The information below is about IL_4LFB_004
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_51454.3
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 45
Unit IDs
6N1D|1|A16S|C|54
6N1D|1|A16S|A|55
6N1D|1|A16S|U|56
*
6N1D|1|A16S|A|356
6N1D|1|A16S|G|357
Current chains
- Chain A16S
- 16S rRNA
Nearby chains
- Chain AS20
- 30S ribosomal protein S20
- Chain BL09
- 50S ribosomal protein L9
Coloring options: