IL_6N1D_004

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAU*AG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_004 not in the Motif Atlas

Homologous match to IL_4LFB_004

Geometric discrepancy: 0.1324

The information below is about IL_4LFB_004

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6N1D|1|A16S|C|54
6N1D|1|A16S|A|55
6N1D|1|A16S|U|56
*
6N1D|1|A16S|A|356
6N1D|1|A16S|G|357

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS20

30S ribosomal protein S20

Chain BL09

50S ribosomal protein L9