3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
6N1D|1|A16S|U|244, 6N1D|1|A16S|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_011 not in the Motif Atlas
Homologous match to IL_6CZR_123
Geometric discrepancy: 0.1369
The information below is about IL_6CZR_123
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.2
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
6

Unit IDs

6N1D|1|A16S|C|242
6N1D|1|A16S|A|243
6N1D|1|A16S|U|244
6N1D|1|A16S|C|245
6N1D|1|A16S|A|246
6N1D|1|A16S|G|247
*
6N1D|1|A16S|C|277
6N1D|1|A16S|G|278
6N1D|1|A16S|A|279
6N1D|1|A16S|C|280
6N1D|1|A16S|G|281
6N1D|1|A16S|A|282
6N1D|1|A16S|C|283
6N1D|1|A16S|G|284

Current chains

Chain A16S
16S rRNA

Nearby chains

Chain AS12
30S ribosomal protein S12
Chain AS17
30S ribosomal protein S17

Coloring options:


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