IL_6N1D_019

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_019 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1547

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6N1D|1|A16S|G|450
6N1D|1|A16S|A|451
6N1D|1|A16S|A|452
6N1D|1|A16S|A|453
6N1D|1|A16S|C|454
6N1D|1|A16S|C|455
*
6N1D|1|A16S|G|477
6N1D|1|A16S|A|478
6N1D|1|A16S|C|479
6N1D|1|A16S|U|480
6N1D|1|A16S|G|481
6N1D|1|A16S|A|482
6N1D|1|A16S|C|483

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS16

30S ribosomal protein S16