IL_6N1D_020

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_020 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.2213

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6N1D|1|A16S|C|504
6N1D|1|A16S|G|505
6N1D|1|A16S|G|506
6N1D|1|A16S|C|507
6N1D|1|A16S|C|508
6N1D|1|A16S|A|509
6N1D|1|A16S|A|510
6N1D|1|A16S|C|511
*
6N1D|1|A16S|G|540
6N1D|1|A16S|G|541

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AS04

30S ribosomal protein S4

Chain AS05

30S ribosomal protein S5

Chain AS12

30S ribosomal protein S12