IL_6N1D_032

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_032 not in the Motif Atlas

Homologous match to IL_5J7L_036

Geometric discrepancy: 0.1313

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6N1D|1|A16S|G|774
6N1D|1|A16S|G|775
6N1D|1|A16S|G|776
6N1D|1|A16S|A|777
6N1D|1|A16S|G|778
*
6N1D|1|A16S|U|804
6N1D|1|A16S|C|805

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AL02

50S ribosomal protein L2

Chain AS11

30S ribosomal protein S11