IL_6N1D_034

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_034 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.135

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6N1D|1|A16S|G|887
6N1D|1|A16S|G|888
6N1D|1|A16S|A|889
6N1D|1|A16S|G|890
6N1D|1|A16S|U|891
6N1D|1|A16S|A|892
6N1D|1|A16S|C|893
6N1D|1|A16S|G|894
*
6N1D|1|A16S|U|905
6N1D|1|A16S|G|906
6N1D|1|A16S|A|907
6N1D|1|A16S|A|908
6N1D|1|A16S|A|909
6N1D|1|A16S|C|910

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AS12

30S ribosomal protein S12