IL_6N1D_037

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6N1D|1|A16S|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_037 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.1844

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6N1D|1|A16S|G|933
6N1D|1|A16S|C|934
6N1D|1|A16S|A|935
*
6N1D|1|A16S|U|1380
6N1D|1|A16S|U|1381
6N1D|1|A16S|C|1382
6N1D|1|A16S|C|1383
6N1D|1|A16S|C|1384

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain APTN

Transfer RNA; tRNA

Chain AS07

30S ribosomal protein S7

Chain AS09

30S ribosomal protein S9