IL_6N1D_050
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GAUG*CUAAUC
- Length
- 10 nucleotides
- Bulged bases
- 6N1D|1|A16S|U|1257, 6N1D|1|A16S|A|1280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_050 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.2976
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.2
- Basepair signature
- cWW-cSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6N1D|1|A16S|G|1255
6N1D|1|A16S|A|1256
6N1D|1|A16S|U|1257
6N1D|1|A16S|G|1258
*
6N1D|1|A16S|C|1277
6N1D|1|A16S|U|1278
6N1D|1|A16S|A|1279
6N1D|1|A16S|A|1280
6N1D|1|A16S|U|1281
6N1D|1|A16S|C|1282
Current chains
- Chain A16S
- 16S rRNA
Nearby chains
- Chain AS03
- 30S ribosomal protein S3
- Chain AS10
- 30S ribosomal protein S10
- Chain AS14
- 30S ribosomal protein S14 type Z
- Chain ATHX
- 30S ribosomal protein Thx
Coloring options: