IL_6N1D_054

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

6N1D|1|A16S|C|1400, 6N1D|1|A16S|A|1503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_054 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2179

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6N1D|1|A16S|C|1399
6N1D|1|A16S|C|1400
6N1D|1|A16S|G|1401
*
6N1D|1|A16S|C|1501
6N1D|1|A16S|A|1502
6N1D|1|A16S|A|1503
6N1D|1|A16S|G|1504

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain AMRN

mRNA

Chain APTN

Transfer RNA; tRNA