IL_6N1D_057

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_057 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.25

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6N1D|1|A16S|C|1407
6N1D|1|A16S|A|1408
6N1D|1|A16S|C|1409
*
6N1D|1|A16S|G|1491
6N1D|1|A16S|A|1492
6N1D|1|A16S|A|1493
6N1D|1|A16S|G|1494

Current chains

Chain A16S

16S rRNA

Nearby chains

Chain A23S

Large subunit ribosomal RNA; LSU rRNA

Chain AS12

30S ribosomal protein S12