3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAG*CGAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_060 not in the Motif Atlas
Homologous match to IL_6CZR_170
Geometric discrepancy: 0.161
The information below is about IL_6CZR_170
Detailed Annotation
UAA/GAN variation
Broad Annotation
UAA/GAN variation
Motif group
IL_77691.4
Basepair signature
cWW-tSH-L-R-L-cWW
Number of instances in this motif group
9

Unit IDs

6N1D|1|A16S|C|1431
6N1D|1|A16S|G|1432
6N1D|1|A16S|A|1433
6N1D|1|A16S|A|1434
6N1D|1|A16S|G|1435
*
6N1D|1|A16S|C|1466
6N1D|1|A16S|G|1467
6N1D|1|A16S|A|1468
6N1D|1|A16S|G|1469

Current chains

Chain A16S
16S rRNA

Nearby chains

Chain A23S
Large subunit ribosomal RNA; LSU rRNA
Chain AL19
50S ribosomal protein L19
Chain AS20
30S ribosomal protein S20

Coloring options:


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