IL_6N1D_060
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAAG*CGAG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_060 not in the Motif Atlas
- Homologous match to IL_6CZR_170
- Geometric discrepancy: 0.161
- The information below is about IL_6CZR_170
- Detailed Annotation
- UAA/GAN variation
- Broad Annotation
- UAA/GAN variation
- Motif group
- IL_77691.4
- Basepair signature
- cWW-tSH-L-R-L-cWW
- Number of instances in this motif group
- 9
Unit IDs
6N1D|1|A16S|C|1431
6N1D|1|A16S|G|1432
6N1D|1|A16S|A|1433
6N1D|1|A16S|A|1434
6N1D|1|A16S|G|1435
*
6N1D|1|A16S|C|1466
6N1D|1|A16S|G|1467
6N1D|1|A16S|A|1468
6N1D|1|A16S|G|1469
Current chains
- Chain A16S
- 16S rRNA
Nearby chains
- Chain A23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL19
- 50S ribosomal protein L19
- Chain AS20
- 30S ribosomal protein S20
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