IL_6N1D_072

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAAU*AUAG

Length

9 nucleotides

Bulged bases

6N1D|1|A23S|A|271|||V

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_072 not in the Motif Atlas

Homologous match to IL_7RQB_011

Geometric discrepancy: 0.2154

The information below is about IL_7RQB_011

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6N1D|1|A23S|C|271|||S
6N1D|1|A23S|G|271|||T
6N1D|1|A23S|A|271|||U
6N1D|1|A23S|A|271|||V
6N1D|1|A23S|U|283
*
6N1D|1|A23S|A|357
6N1D|1|A23S|U|357|||A
6N1D|1|A23S|A|357|||B
6N1D|1|A23S|G|357|||C

Current chains

Chain A23S

23S rRNA

Nearby chains