IL_6N1D_073

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

6N1D|1|A23S|G|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_073 not in the Motif Atlas

Homologous match to IL_7RQB_012

Geometric discrepancy: 0.277

The information below is about IL_7RQB_012

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6N1D|1|A23S|C|287
6N1D|1|A23S|A|289
6N1D|1|A23S|G|290
*
6N1D|1|A23S|U|350
6N1D|1|A23S|G|351
6N1D|1|A23S|G|352
6N1D|1|A23S|G|353

Current chains

Chain A23S

23S rRNA

Nearby chains