IL_6N1D_077

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUAAG*CGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_077 not in the Motif Atlas

Homologous match to IL_7RQB_016

Geometric discrepancy: 0.1623

The information below is about IL_7RQB_016

Detailed Annotation

AAA cross-strand stack

Broad Annotation

AAA cross-strand stack

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6N1D|1|A23S|U|606
6N1D|1|A23S|U|607
6N1D|1|A23S|A|608
6N1D|1|A23S|A|609
6N1D|1|A23S|G|610
*
6N1D|1|A23S|C|618
6N1D|1|A23S|G|619
6N1D|1|A23S|G|620
6N1D|1|A23S|A|621
6N1D|1|A23S|G|622

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL04

50S ribosomal protein L4

Chain AL15

50S ribosomal protein L15