IL_6N1D_091

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCU*AAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_091 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.2739

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6N1D|1|A23S|G|875
6N1D|1|A23S|C|876
6N1D|1|A23S|U|877
*
6N1D|1|A23S|A|899
6N1D|1|A23S|A|900
6N1D|1|A23S|A|901
6N1D|1|A23S|C|902

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL16

50S ribosomal protein L16

Chain AL25

50S ribosomal protein L25