IL_6N1D_097

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCCCCAAG*CG

Length

10 nucleotides

Bulged bases

6N1D|1|A23S|A|1009

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_097 not in the Motif Atlas

Homologous match to IL_4WF9_037

Geometric discrepancy: 0.214

The information below is about IL_4WF9_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6N1D|1|A23S|C|1004
6N1D|1|A23S|C|1005
6N1D|1|A23S|C|1006
6N1D|1|A23S|C|1007
6N1D|1|A23S|C|1008
6N1D|1|A23S|A|1009
6N1D|1|A23S|A|1010
6N1D|1|A23S|G|1011
*
6N1D|1|A23S|C|1150
6N1D|1|A23S|G|1151

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL13

50S ribosomal protein L13

Chain AL20

50S ribosomal protein L20