3D structure

PDB id
6N1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
CGAAGACAG*UCGAG
Length
14 nucleotides
Bulged bases
6N1D|1|A23S|A|1045, 6N1D|1|A23S|A|1046
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6N1D_102 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.3541
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6N1D|1|A23S|C|1043
6N1D|1|A23S|G|1044
6N1D|1|A23S|A|1045
6N1D|1|A23S|A|1046
6N1D|1|A23S|G|1047
6N1D|1|A23S|A|1048
6N1D|1|A23S|C|1049
6N1D|1|A23S|A|1050
6N1D|1|A23S|G|1051
*
6N1D|1|A23S|U|1108
6N1D|1|A23S|C|1109
6N1D|1|A23S|G|1110
6N1D|1|A23S|A|1111
6N1D|1|A23S|G|1112

Current chains

Chain A23S
23S rRNA

Nearby chains

Chain AL06
50S ribosomal protein L6

Coloring options:


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