IL_6N1D_110

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_110 not in the Motif Atlas

Homologous match to IL_7RQB_050

Geometric discrepancy: 0.1424

The information below is about IL_7RQB_050

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.2

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

6N1D|1|A23S|G|1310
6N1D|1|A23S|G|1311
6N1D|1|A23S|U|1312
6N1D|1|A23S|U|1313
*
6N1D|1|A23S|A|1603
6N1D|1|A23S|C|1604

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL23

50S ribosomal protein L23

Chain AL34

50S ribosomal protein L34