IL_6N1D_113

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAAG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_113 not in the Motif Atlas

Homologous match to IL_7RQB_053

Geometric discrepancy: 0.2533

The information below is about IL_7RQB_053

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6N1D|1|A23S|U|1357
6N1D|1|A23S|G|1358
6N1D|1|A23S|A|1359
6N1D|1|A23S|A|1360
6N1D|1|A23S|G|1361
*
6N1D|1|A23S|C|1370
6N1D|1|A23S|G|1371
6N1D|1|A23S|U|1372
6N1D|1|A23S|A|1373
6N1D|1|A23S|G|1374

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL02

50S ribosomal protein L2

Chain AL28

50S ribosomal protein L28

Chain AL34

50S ribosomal protein L34