IL_6N1D_122

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6N1D|1|A23S|C|1543|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_122 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.4902

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6N1D|1|A23S|G|1526
6N1D|1|A23S|G|1527
6N1D|1|A23S|A|1528
6N1D|1|A23S|A|1529
6N1D|1|A23S|G|1530
*
6N1D|1|A23S|U|1541
6N1D|1|A23S|G|1542
6N1D|1|A23S|A|1543
6N1D|1|A23S|C|1543|||A
6N1D|1|A23S|A|1544
6N1D|1|A23S|A|1545
6N1D|1|A23S|C|1546

Current chains

Chain A23S

23S rRNA

Nearby chains