IL_6N1D_126

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6N1D|1|A23S|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_126 not in the Motif Atlas

Homologous match to IL_7A0S_062

Geometric discrepancy: 0.2159

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6N1D|1|A23S|A|1669
6N1D|1|A23S|C|1670
6N1D|1|A23S|U|1671
6N1D|1|A23S|C|1672
6N1D|1|A23S|U|1673
6N1D|1|A23S|G|1674
*
6N1D|1|A23S|C|1990
6N1D|1|A23S|U|1991
6N1D|1|A23S|G|1992
6N1D|1|A23S|U|1993

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL03

50S ribosomal protein L3

Chain AL14

50S ribosomal protein L14