IL_6N1D_129

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6N1D|1|A23S|G|1801, 6N1D|1|A23S|G|1816, 6N1D|1|A23S|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_129 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.118

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6N1D|1|A23S|U|1798
6N1D|1|A23S|G|1799
6N1D|1|A23S|C|1800
6N1D|1|A23S|G|1801
6N1D|1|A23S|A|1802
6N1D|1|A23S|A|1803
6N1D|1|A23S|C|1804
*
6N1D|1|A23S|G|1813
6N1D|1|A23S|G|1814
6N1D|1|A23S|A|1815
6N1D|1|A23S|G|1816
6N1D|1|A23S|G|1817
6N1D|1|A23S|U|1818
6N1D|1|A23S|A|1819
6N1D|1|A23S|U|1820
6N1D|1|A23S|A|1821

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

50S ribosomal protein L2