IL_6N1D_130

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

6N1D|1|A23S|C|1838

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_130 not in the Motif Atlas

Homologous match to IL_7RQB_071

Geometric discrepancy: 0.1835

The information below is about IL_7RQB_071

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6N1D|1|A23S|C|1837
6N1D|1|A23S|C|1838
6N1D|1|A23S|G|1839
6N1D|1|A23S|G|1840
*
6N1D|1|A23S|C|1902
6N1D|1|A23S|G|1903

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain A16S

Small subunit ribosomal RNA; SSU rRNA

Chain AL02

50S ribosomal protein L2