IL_6N1D_134

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGGAG*CGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_134 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.2736

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6N1D|1|A23S|G|1856
6N1D|1|A23S|G|1857
6N1D|1|A23S|G|1858
6N1D|1|A23S|A|1859
6N1D|1|A23S|G|1860
*
6N1D|1|A23S|C|1882
6N1D|1|A23S|G|1883
6N1D|1|A23S|A|1884
6N1D|1|A23S|A|1885
6N1D|1|A23S|C|1886

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL01

50S ribosomal protein L1

Chain AL28

50S ribosomal protein L28

Chain APTN

Transfer RNA; tRNA