IL_6N1D_144

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_144 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.2174

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

6N1D|1|A23S|G|2124
6N1D|1|A23S|G|2125
6N1D|1|A23S|A|2126
6N1D|1|A23S|G|2127
*
6N1D|1|A23S|C|2161
6N1D|1|A23S|G|2162
6N1D|1|A23S|C|2163
6N1D|1|A23S|C|2164
6N1D|1|A23S|G|2165
6N1D|1|A23S|G|2166
6N1D|1|A23S|U|2167
6N1D|1|A23S|G|2168
6N1D|1|A23S|A|2169
6N1D|1|A23S|A|2170
6N1D|1|A23S|A|2171
6N1D|1|A23S|U|2172
6N1D|1|A23S|A|2173
6N1D|1|A23S|C|2174

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL01

50S ribosomal protein L1

Chain APTN

Transfer RNA; tRNA