IL_6N1D_155

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

6N1D|1|A23S|A|2572, 6N1D|1|A23S|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_155 not in the Motif Atlas

Geometric match to IL_7A0S_090

Geometric discrepancy: 0.1692

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6N1D|1|A23S|C|2512
6N1D|1|A23S|G|2513
*
6N1D|1|A23S|C|2571
6N1D|1|A23S|A|2572
6N1D|1|A23S|C|2573
6N1D|1|A23S|G|2574

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL03

50S ribosomal protein L3

Chain AL13

50S ribosomal protein L13