IL_6N1D_159

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_159 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.175

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6N1D|1|A23S|C|2652
6N1D|1|A23S|U|2653
6N1D|1|A23S|A|2654
6N1D|1|A23S|G|2655
6N1D|1|A23S|U|2656
6N1D|1|A23S|A|2657
6N1D|1|A23S|C|2658
*
6N1D|1|A23S|G|2663
6N1D|1|A23S|G|2664
6N1D|1|A23S|A|2665
6N1D|1|A23S|C|2666
6N1D|1|A23S|C|2667
6N1D|1|A23S|G|2668

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL06

50S ribosomal protein L6