IL_6N1D_160

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCUCU*AUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_160 not in the Motif Atlas

Homologous match to IL_7RQB_104

Geometric discrepancy: 0.1698

The information below is about IL_7RQB_104

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

6N1D|1|A23S|C|2680
6N1D|1|A23S|C|2681
6N1D|1|A23S|U|2682
6N1D|1|A23S|C|2683
6N1D|1|A23S|U|2684
*
6N1D|1|A23S|A|2725
6N1D|1|A23S|U|2726
6N1D|1|A23S|G|2727

Current chains

Chain A23S

23S rRNA

Nearby chains

Chain AL03

50S ribosomal protein L3

Chain AL14

50S ribosomal protein L14

Chain AL17

50S ribosomal protein L17

Chain AL19

50S ribosomal protein L19