IL_6N1D_171
3D structure
- PDB id
- 6N1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAUGGUAC*GGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6N1D_171 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.1074
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6N1D|1|A5S|C|71
6N1D|1|A5S|G|72
6N1D|1|A5S|A|73
6N1D|1|A5S|U|74
6N1D|1|A5S|G|75
6N1D|1|A5S|G|76
6N1D|1|A5S|U|77
6N1D|1|A5S|A|78
6N1D|1|A5S|C|79
*
6N1D|1|A5S|G|97
6N1D|1|A5S|G|98
6N1D|1|A5S|A|99
6N1D|1|A5S|G|100
6N1D|1|A5S|A|101
6N1D|1|A5S|G|102
6N1D|1|A5S|U|103
6N1D|1|A5S|A|104
6N1D|1|A5S|G|105
Current chains
- Chain A5S
- 5s rRNA
Nearby chains
- Chain A23S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL16
- 50S ribosomal protein L16
- Chain AL25
- 50S ribosomal protein L25
- Chain AL30
- 50S ribosomal protein L30
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