IL_6N1D_178

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GUGAC*GGC

Length

8 nucleotides

Bulged bases

6N1D|1|B16S|G|129|||A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_178 not in the Motif Atlas

Homologous match to IL_5J7L_009

Geometric discrepancy: 0.4164

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6N1D|1|B16S|G|128
6N1D|1|B16S|U|129
6N1D|1|B16S|G|129|||A
6N1D|1|B16S|A|130
6N1D|1|B16S|C|131
*
6N1D|1|B16S|G|231
6N1D|1|B16S|G|232
6N1D|1|B16S|C|233

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS16

30S ribosomal protein S16

Chain BS17

30S ribosomal protein S17

Chain BS20

30S ribosomal protein S20