IL_6N1D_180

3D structure

PDB id

6N1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

X-ray Crystal complex showing Spontaneous Ribosomal Translocation of mRNA and tRNAs into a Chimeric Hybrid State

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6N1D|1|B16S|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6N1D_180 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1383

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

6N1D|1|B16S|G|148
6N1D|1|B16S|A|149
6N1D|1|B16S|C|150
6N1D|1|B16S|A|151
6N1D|1|B16S|A|152
6N1D|1|B16S|C|153
*
6N1D|1|B16S|G|168
6N1D|1|B16S|C|169
6N1D|1|B16S|U|170
6N1D|1|B16S|A|171
6N1D|1|B16S|A|172
6N1D|1|B16S|U|173
6N1D|1|B16S|C|174

Current chains

Chain B16S

16S rRNA

Nearby chains

Chain BS20

30S ribosomal protein S20